PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024204-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 308aa    MW: 32656.2 Da    PI: 8.0857
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024204-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058109131123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C++C++ F ++  L  H++ H
  NNU_024204-RA 109 FYCTYCKRKFDSSQALGGHQNAH 131
                    79*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.39E-6106137No hitNo description
PROSITE profilePS5015711.219109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSVMEAPVAE ACLSETSSVS AGSAGSSPCK DTEDRNNKGK LRETAEPAPK VISESGVSFD  60
LKLTHEELSE SSKQQELNLL NCLAGGSSSQ PPEAAPESRL KKSAERKSFY CTYCKRKFDS  120
SQALGGHQNA HKRERSMAKR EQGLAAIALG YPYGRYHPYS SISALHLNGS LNRSSPTASS  180
HVQLHPMIHK AYHPWSSSTT QGYRYSHGGG GGLRSAAMVN AQSAVSRLRM DDCWAGNNGF  240
RMPGVATFDS GAPINLFGDS SAIPALNIAA NRAVDGGGGG GCGDYHSRGV PSENHPSEAQ  300
EPDLSLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244458.10.0PREDICTED: uncharacterized protein LOC104588288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-18zinc-finger protein 1